Proteomic Signature Library for
Staphylococcus aureus COL
  • show
  • profiles
  • threshold (highlighter):
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      summary

      • modus:
      • pattern search
      • expression template:
      • Tig 1
      • highlighter:
      • 2-fold change
      • sorting:
      • descending similarity to expression template (ascending Euclidean distance)
      • limit:
      • 10
       

      expression plots

      • y-axis:
      • change of expression (binary logarithm) compared to the control at 0 min of the corresponding experiment
      • x-axis:
      • time after stress in minutes (time points of additional unstressed controls are introduced by "c")
      • experiments
      • hydrogen peroxide (abbr.: H2O2, O), diamide (abbr.: D), paraquat (abbr.: P), nitric oxide (abbr.: NO, N), fermentation (abbr.: F), nitrate respiration (abbr.: NO3 resp., A), heat (abbr.: H), puromycin (abbr.: U), mupirocin (abbr.: mupi., M)
      • color code
      • changes higher (lower) than 2x (0.5x) are colored in orange (magenta)
      • significnace:
      • asterisks (*) mark significant changes (details)
      • multiple spots:
      • multiple spots for one and the same protein are extended by a spot number (sum of all individual spots of this protein is given in parentheses)
      • protein overlap:
      • overlapping of different proteins are listed with the abbreviation (letter) of the corresponding experiment where protein overlapping have been observed
      • plot order:
      • descending similarity to expression template (ascending Euclidean distance)
       
      • Tig 1 (2)
      • SACOL1722
      • trigger factor
      • show on gel show on gel
      • protein fate (protein fate: protein folding and stabilization)
      • expression plot for Tig 1
      • RplY
      • SACOL0545
      • ribosomal Protein L25
      • show on gel show on gel
      • translation (protein synthesis: ribosomal proteins: synthesis and modification)
      • expression plot for RplY
      • CoaD
      • SACOL1134
      • phosphopantetheine adenylyltransferase 
      • show on gel show on gel
      • biosynthesis of cofactors, prosthetic groups, and carriers (biosynthesis of cofactors, prosthetic groups, and carriers: pantothenate and coenzyme a)
      • expression plot for CoaD
      • SACOL1787 1 (3)
      • SACOL1787
      • chorismate mutase/phospho-2-dehydro-3-deoxyheptonate aldolase
      • show on gel show on gel
      • amino acid biosynthesis (amino acid biosynthesis: aromatic amino acid family)
      • co-localization with: RibD (H2O2, paraquat, fermentation, NO3 resp., heat, puromycin, mupi.)
      • expression plot for SACOL1787 1
      • RibD
      • SACOL1820
      • riboflavin biosynthesis protein RibD
      • show on gel show on gel
      • biosynthesis of cofactors, prosthetic groups, and carriers (biosynthesis of cofactors, prosthetic groups, and carriers: riboflavin, fmn, and fad)
      • co-localization with: SACOL1787 1 (H2O2, paraquat, fermentation, NO3 resp., heat, puromycin, mupi.)
      • regulation: FMN
      • expression plot for RibD
      • Mqo1
      • SACOL2362
      • malate:quinone oxidoreductase
      • show on gel show on gel
      • pyruvate dehydrogenase and tca cyle (energy metabolism: tca cycle)
      • expression plot for Mqo1
      • SACOL0257
      • SACOL0257
      • ribose operon repressor, putative
      • show on gel show on gel
      • regulation (regulatory functions: dna interactions)
      • regulation: SigB+
      • expression plot for SACOL0257
      • PriA 1 (2)
      • SACOL1224
      • primosomal protein N`
      • show on gel show on gel
      • dna metabolism (dna metabolism: dna replication, recombination, and repair)
      • expression plot for PriA 1
      • InfB
      • SACOL1288
      • translation initiation factor IF-2
      • show on gel show on gel
      • translation (protein synthesis: translation factors)
      • expression plot for InfB
      • SACOL1912 2 (3)
      • SACOL1912
      • glucosamine-6-phosphate isomerase, putative
      • show on gel show on gel
      • central intermediary metabolism (central intermediary metabolism: amino sugars)
      • regulation: SigB+
      • expression plot for SACOL1912 2
       

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