Proteomic Signature Library for
Staphylococcus aureus COL
  • show
  • profiles
  • threshold (highlighter):
    •  

      summary

      • modus:
      • pattern search
      • expression template:
      • ThrS 2
      • highlighter:
      • 2-fold change
      • sorting:
      • descending similarity to expression template (ascending Euclidean distance)
      • limit:
      • 10
       

      expression plots

      • y-axis:
      • change of expression (binary logarithm) compared to the control at 0 min of the corresponding experiment
      • x-axis:
      • time after stress in minutes (time points of additional unstressed controls are introduced by "c")
      • experiments
      • hydrogen peroxide (abbr.: H2O2, O), diamide (abbr.: D), paraquat (abbr.: P), nitric oxide (abbr.: NO, N), fermentation (abbr.: F), nitrate respiration (abbr.: NO3 resp., A), heat (abbr.: H), puromycin (abbr.: U), mupirocin (abbr.: mupi., M)
      • color code
      • changes higher (lower) than 2x (0.5x) are colored in orange (magenta)
      • significnace:
      • asterisks (*) mark significant changes (details)
      • multiple spots:
      • multiple spots for one and the same protein are extended by a spot number (sum of all individual spots of this protein is given in parentheses)
      • protein overlap:
      • overlapping of different proteins are listed with the abbreviation (letter) of the corresponding experiment where protein overlapping have been observed
      • plot order:
      • descending similarity to expression template (ascending Euclidean distance)
       
      • ThrS 2 (3)
      • SACOL1729
      • threonyl-tRNA synthetase
      • show on gel show on gel
      • translation (protein synthesis: trna aminoacylation)
      • co-localization with: ThrS 1 (H2O2, fermentation, puromycin), NrdE 1 (H2O2, NO)
      • regulation: T-box(Thr)
      • expression plot for ThrS 2
      • NrdE 1 (2)
      • SACOL0792
      • ribonucleoside-diphosphate reductase, alpha subunit
      • show on gel show on gel
      • nucleotide metabolism (purines, pyrimidines, nucleosides, and nucleotides: 2'-deoxyribonucleotide metabolism)
      • co-localization with: ThrS 2 (H2O2, NO), ThrS 1 (H2O2, diamide), ThrS 3 (paraquat)
      • regulation: NrdR
      • expression plot for NrdE 1
      • NrdE 2 (2)
      • SACOL0792
      • ribonucleoside-diphosphate reductase, alpha subunit
      • show on gel show on gel
      • nucleotide metabolism (purines, pyrimidines, nucleosides, and nucleotides: 2'-deoxyribonucleotide metabolism)
      • co-localization with: Pyk 2 (fermentation, NO3 resp.)
      • regulation: NrdR
      • expression plot for NrdE 2
      • FbaA 3 (4)
      • SACOL2117
      • fructose-bisphosphate aldolase, class II
      • show on gel show on gel
      • glycolysis/gluconeogenesis (energy metabolism: glycolysis/gluconeogenesis)
      • co-localization with: FbaA 1 (NO)
      • regulation: CcpA
      • expression plot for FbaA 3
      • Tkt 1 (2)
      • SACOL1377
      • transketolase
      • show on gel show on gel
      • pentose phosphate pathway (energy metabolism: pentose phosphate pathway)
      • co-localization with: Tkt 2 (fermentation)
      • expression plot for Tkt 1
      • SACOL1801
      • SACOL1801
      • peptidase, M20/M25/M40 family
      • show on gel show on gel
      • protein fate (protein fate: degradation of proteins, peptides, and glycopeptides)
      • expression plot for SACOL1801
      • TypA
      • SACOL1118
      • GTP-binding protein TypA
      • show on gel show on gel
      • unknown function or specifity (unknown function: general)
      • expression plot for TypA
      • SACOL2000
      • SACOL2000
      • aminotransferase, putative
      • show on gel show on gel
      • unknown function or specifity (unknown function: enzymes of unknown specificity)
      • regulation: LexA
      • expression plot for SACOL2000
      • SACOL0944
      • SACOL0944
      • NADH dehydrogenase, putative
      • show on gel show on gel
      • electron transport (energy metabolism: electron transport)
      • expression plot for SACOL0944
      • ThrS 1 (3)
      • SACOL1729
      • threonyl-tRNA synthetase
      • show on gel show on gel
      • translation (protein synthesis: trna aminoacylation)
      • co-localization with: ThrS 2 (H2O2, fermentation, puromycin), NrdE 1 (H2O2, diamide)
      • regulation: T-box(Thr)
      • expression plot for ThrS 1
       

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