Proteomic Signature Library for
Staphylococcus aureus COL
  • show
  • profiles
  • threshold (highlighter):
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      summary

      • modus:
      • pattern search
      • expression template:
      • ThrS 1
      • highlighter:
      • 2-fold change
      • sorting:
      • descending similarity to expression template (ascending Euclidean distance)
      • limit:
      • 10
       

      expression plots

      • y-axis:
      • change of expression (binary logarithm) compared to the control at 0 min of the corresponding experiment
      • x-axis:
      • time after stress in minutes (time points of additional unstressed controls are introduced by "c")
      • experiments
      • hydrogen peroxide (abbr.: H2O2, O), diamide (abbr.: D), paraquat (abbr.: P), nitric oxide (abbr.: NO, N), fermentation (abbr.: F), nitrate respiration (abbr.: NO3 resp., A), heat (abbr.: H), puromycin (abbr.: U), mupirocin (abbr.: mupi., M)
      • color code
      • changes higher (lower) than 2x (0.5x) are colored in orange (magenta)
      • significnace:
      • asterisks (*) mark significant changes (details)
      • multiple spots:
      • multiple spots for one and the same protein are extended by a spot number (sum of all individual spots of this protein is given in parentheses)
      • protein overlap:
      • overlapping of different proteins are listed with the abbreviation (letter) of the corresponding experiment where protein overlapping have been observed
      • plot order:
      • descending similarity to expression template (ascending Euclidean distance)
       
      • ThrS 1 (3)
      • SACOL1729
      • threonyl-tRNA synthetase
      • show on gel show on gel
      • translation (protein synthesis: trna aminoacylation)
      • co-localization with: ThrS 2 (H2O2, fermentation, puromycin), NrdE 1 (H2O2, diamide)
      • regulation: T-box(Thr)
      • expression plot for ThrS 1
      • ThrS 2 (3)
      • SACOL1729
      • threonyl-tRNA synthetase
      • show on gel show on gel
      • translation (protein synthesis: trna aminoacylation)
      • co-localization with: ThrS 1 (H2O2, fermentation, puromycin), NrdE 1 (H2O2, NO)
      • regulation: T-box(Thr)
      • expression plot for ThrS 2
      • DapD
      • SACOL1432
      • 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
      • show on gel show on gel
      • amino acid biosynthesis (amino acid biosynthesis: aspartate family)
      • regulation: CodY, Lysine
      • expression plot for DapD
      • GluD
      • SACOL0961
      • glutamate dehydrogenase, NAD-specific
      • show on gel show on gel
      • amino acid biosynthesis (amino acid biosynthesis: glutamate family)
      • regulation: CcpA
      • expression plot for GluD
      • SACOL0431 3 (4)
      • SACOL0431
      • trans-sulfuration enzyme family protein
      • show on gel show on gel
      • amino acid biosynthesis (amino acid biosynthesis: aspartate family)
      • regulation: CodY, T-box(Met)
      • expression plot for SACOL0431 3
      • FbaA 3 (4)
      • SACOL2117
      • fructose-bisphosphate aldolase, class II
      • show on gel show on gel
      • glycolysis/gluconeogenesis (energy metabolism: glycolysis/gluconeogenesis)
      • co-localization with: FbaA 1 (NO)
      • regulation: CcpA
      • expression plot for FbaA 3
      • SACOL2616
      • SACOL2616
      • 2-dehydropantoate 2-reductase PanE, putative
      • show on gel show on gel
      • biosynthesis of cofactors, prosthetic groups, and carriers (biosynthesis of cofactors, prosthetic groups, and carriers: pantothenate and coenzyme a)
      • expression plot for SACOL2616
      • SACOL0430 1 (3)
      • SACOL0430
      • trans-sulfuration enzyme family protein
      • show on gel show on gel
      • amino acid biosynthesis (amino acid biosynthesis: aspartate family)
      • regulation: CodY, T-box(Met)
      • expression plot for SACOL0430 1
      • PepQ
      • SACOL1756
      • proline dipeptidase
      • show on gel show on gel
      • protein fate (protein fate: degradation of proteins, peptides, and glycopeptides)
      • expression plot for PepQ
      • SACOL1801
      • SACOL1801
      • peptidase, M20/M25/M40 family
      • show on gel show on gel
      • protein fate (protein fate: degradation of proteins, peptides, and glycopeptides)
      • expression plot for SACOL1801
       

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