Proteomic Signature Library for
Staphylococcus aureus COL
  • show
  • profiles
  • threshold (highlighter):
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      summary

      • modus:
      • pattern search
      • expression template:
      • SACOL1402
      • highlighter:
      • 2-fold change
      • sorting:
      • descending similarity to expression template (ascending Euclidean distance)
      • limit:
      • 10
       

      expression plots

      • y-axis:
      • change of expression (binary logarithm) compared to the control at 0 min of the corresponding experiment
      • x-axis:
      • time after stress in minutes (time points of additional unstressed controls are introduced by "c")
      • experiments
      • hydrogen peroxide (abbr.: H2O2, O), diamide (abbr.: D), paraquat (abbr.: P), nitric oxide (abbr.: NO, N), fermentation (abbr.: F), nitrate respiration (abbr.: NO3 resp., A), heat (abbr.: H), puromycin (abbr.: U), mupirocin (abbr.: mupi., M)
      • color code
      • changes higher (lower) than 2x (0.5x) are colored in orange (magenta)
      • significnace:
      • asterisks (*) mark significant changes (details)
      • multiple spots:
      • multiple spots for one and the same protein are extended by a spot number (sum of all individual spots of this protein is given in parentheses)
      • protein overlap:
      • overlapping of different proteins are listed with the abbreviation (letter) of the corresponding experiment where protein overlapping have been observed
      • plot order:
      • descending similarity to expression template (ascending Euclidean distance)
       
      • SACOL1402
      • SACOL1402
      • glutamyl aminopeptidase, putative
      • show on gel show on gel
      • protein fate (hypothetical proteins: conserved)
      • co-localization with: NadE (H2O2, NO)
      • expression plot for SACOL1402
      • PdhD 3 (3)
      • SACOL1105
      • pyruvate dehydrogenase complex E3 component, lipoamide dehydrogenase
      • show on gel show on gel
      • pyruvate dehydrogenase and tca cyle (energy metabolism: pyruvate dehydrogenase)
      • co-localization with: PdhD 2 (paraquat, NO, fermentation, NO3 resp., mupi.)
      • expression plot for PdhD 3
      • GalM
      • SACOL2332
      • aldose 1-epimerase
      • show on gel show on gel
      • degradation of sugars (energy metabolism: sugars)
      • expression plot for GalM
      • NrdF 1 (2)
      • SACOL0793
      • ribonucleoside-diphosphate reductase 2, beta subunit
      • show on gel show on gel
      • nucleotide metabolism (purines, pyrimidines, nucleosides, and nucleotides: 2'-deoxyribonucleotide metabolism)
      • regulation: NrdR
      • expression plot for NrdF 1
      • SACOL1627
      • SACOL1627
      • conserved hypothetical protein TIGR00043
      • show on gel show on gel
      • unknown function or specifity (hypothetical proteins: conserved)
      • expression plot for SACOL1627
      • SACOL0917
      • SACOL0917
      • NifU domain protein
      • show on gel show on gel
      • unknown function or specifity (unknown function: general)
      • co-localization with: RsbW 1 (diamide, paraquat, NO, fermentation, NO3 resp., puromycin, mupi.)
      • regulation: PerR
      • expression plot for SACOL0917
      • GuaC
      • SACOL1371
      • GMP reductase
      • show on gel show on gel
      • nucleotide metabolism (purines, pyrimidines, nucleosides, and nucleotides: nucleotide and nucleoside interconversions)
      • expression plot for GuaC
      • Udk
      • SACOL1666
      • uridine kinase
      • show on gel show on gel
      • nucleotide metabolism (purines, pyrimidines, nucleosides, and nucleotides: salvage of nucleosides and nucleotides)
      • expression plot for Udk
      • SufD 2 (4)
      • SACOL0915
      • FeS assembly protein SufD
      • show on gel show on gel
      • biosynthesis of cofactors, prosthetic groups, and carriers (biosynthesis of cofactors, prosthetic groups, and carriers: other)
      • co-localization with: SerA 2 (H2O2), SufD 1 (H2O2, paraquat, NO, fermentation), KatA 5 (H2O2, paraquat)
      • regulation: PerR
      • expression plot for SufD 2
      • SACOL2161
      • SACOL2161
      • UTP-glucose-1-phosphate uridylyltransferase family protein
      • show on gel show on gel
      • cell envelope (cell envelope: biosynthesis and degradation of surface polysaccharides and lipopolysaccharides)
      • regulation: CcpA, LexA
      • expression plot for SACOL2161
       

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