Proteomic Signature Library for
Staphylococcus aureus COL
  • show
  • profiles
  • threshold (highlighter):
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      summary

      • modus:
      • pattern search
      • expression template:
      • RibD
      • highlighter:
      • 2-fold change
      • sorting:
      • descending similarity to expression template (ascending Euclidean distance)
      • limit:
      • 10
       

      expression plots

      • y-axis:
      • change of expression (binary logarithm) compared to the control at 0 min of the corresponding experiment
      • x-axis:
      • time after stress in minutes (time points of additional unstressed controls are introduced by "c")
      • experiments
      • hydrogen peroxide (abbr.: H2O2, O), diamide (abbr.: D), paraquat (abbr.: P), nitric oxide (abbr.: NO, N), fermentation (abbr.: F), nitrate respiration (abbr.: NO3 resp., A), heat (abbr.: H), puromycin (abbr.: U), mupirocin (abbr.: mupi., M)
      • color code
      • changes higher (lower) than 2x (0.5x) are colored in orange (magenta)
      • significnace:
      • asterisks (*) mark significant changes (details)
      • multiple spots:
      • multiple spots for one and the same protein are extended by a spot number (sum of all individual spots of this protein is given in parentheses)
      • protein overlap:
      • overlapping of different proteins are listed with the abbreviation (letter) of the corresponding experiment where protein overlapping have been observed
      • plot order:
      • descending similarity to expression template (ascending Euclidean distance)
       
      • SACOL1787 1 (3)
      • SACOL1787
      • chorismate mutase/phospho-2-dehydro-3-deoxyheptonate aldolase
      • show on gel show on gel
      • amino acid biosynthesis (amino acid biosynthesis: aromatic amino acid family)
      • co-localization with: RibD (H2O2, paraquat, fermentation, NO3 resp., heat, puromycin, mupi.)
      • expression plot for SACOL1787 1
      • RibD
      • SACOL1820
      • riboflavin biosynthesis protein RibD
      • show on gel show on gel
      • biosynthesis of cofactors, prosthetic groups, and carriers (biosynthesis of cofactors, prosthetic groups, and carriers: riboflavin, fmn, and fad)
      • co-localization with: SACOL1787 1 (H2O2, paraquat, fermentation, NO3 resp., heat, puromycin, mupi.)
      • regulation: FMN
      • expression plot for RibD
      • AckA 2 (2)
      • SACOL1760
      • acetate kinase
      • show on gel show on gel
      • fermentation (central intermediary metabolism: other)
      • expression plot for AckA 2
      • SACOL1912 2 (3)
      • SACOL1912
      • glucosamine-6-phosphate isomerase, putative
      • show on gel show on gel
      • central intermediary metabolism (central intermediary metabolism: amino sugars)
      • regulation: SigB+
      • expression plot for SACOL1912 2
      • RecN
      • SACOL1564
      • DNA repair protein RecN
      • show on gel show on gel
      • dna metabolism (dna metabolism: dna replication, recombination, and repair)
      • regulation: ArgR
      • expression plot for RecN
      • AroE
      • SACOL1652
      • shikimate 5-dehydrogenase
      • show on gel show on gel
      • amino acid biosynthesis (amino acid biosynthesis: aromatic amino acid family)
      • expression plot for AroE
      • GltD
      • SACOL0515
      • glutamate synthase, small subunit
      • show on gel show on gel
      • amino acid biosynthesis (amino acid biosynthesis: glutamate family)
      • regulation: CodY, GltC
      • expression plot for GltD
      • IlvA2 2 (3)
      • SACOL2050
      • threonine dehydratase
      • show on gel show on gel
      • amino acid biosynthesis (amino acid biosynthesis: pyruvate family)
      • regulation: CodY
      • expression plot for IlvA2 2
      • AroC
      • SACOL1506
      • chorismate synthase
      • show on gel show on gel
      • amino acid biosynthesis (amino acid biosynthesis: aromatic amino acid family)
      • regulation: CodY
      • expression plot for AroC
      • SufB 1 (2)
      • SACOL0918
      • FeS assembly protein SufB
      • show on gel show on gel
      • biosynthesis of cofactors, prosthetic groups, and carriers (biosynthesis of cofactors, prosthetic groups, and carriers: other)
      • regulation: PerR
      • expression plot for SufB 1
       

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