Proteomic Signature Library for
Staphylococcus aureus COL
  • show
  • profiles
  • threshold (highlighter):
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      summary

      • modus:
      • pattern search
      • expression template:
      • Pyc 1
      • highlighter:
      • 2-fold change
      • sorting:
      • descending similarity to expression template (ascending Euclidean distance)
      • limit:
      • 10
       

      expression plots

      • y-axis:
      • change of expression (binary logarithm) compared to the control at 0 min of the corresponding experiment
      • x-axis:
      • time after stress in minutes (time points of additional unstressed controls are introduced by "c")
      • experiments
      • hydrogen peroxide (abbr.: H2O2, O), diamide (abbr.: D), paraquat (abbr.: P), nitric oxide (abbr.: NO, N), fermentation (abbr.: F), nitrate respiration (abbr.: NO3 resp., A), heat (abbr.: H), puromycin (abbr.: U), mupirocin (abbr.: mupi., M)
      • color code
      • changes higher (lower) than 2x (0.5x) are colored in orange (magenta)
      • significnace:
      • asterisks (*) mark significant changes (details)
      • multiple spots:
      • multiple spots for one and the same protein are extended by a spot number (sum of all individual spots of this protein is given in parentheses)
      • protein overlap:
      • overlapping of different proteins are listed with the abbreviation (letter) of the corresponding experiment where protein overlapping have been observed
      • plot order:
      • descending similarity to expression template (ascending Euclidean distance)
       
      • GyrA 2 (2)
      • SACOL0006
      • DNA gyrase, A subunit
      • show on gel show on gel
      • dna metabolism (dna metabolism: dna replication, recombination, and repair)
      • co-localization with: Pyc 1 (H2O2, diamide, paraquat, NO, fermentation, NO3 resp., heat, puromycin, mupi.)
      • expression plot for GyrA 2
      • Pyc 1 (3)
      • SACOL1123
      • pyruvate carboxylase
      • show on gel show on gel
      • glycolysis/gluconeogenesis (energy metabolism: glycolysis/gluconeogenesis)
      • co-localization with: GyrA 2 (H2O2, diamide, paraquat, NO, fermentation, NO3 resp., heat, puromycin, mupi.)
      • regulation: CodY, SigB-
      • expression plot for Pyc 1
      • AcnA 1 (2)
      • SACOL1385
      • aconitate hydratase
      • show on gel show on gel
      • pyruvate dehydrogenase and tca cyle (energy metabolism: tca cycle)
      • co-localization with: AcnA 2 (fermentation)
      • regulation: CcpA, Fur
      • expression plot for AcnA 1
      • AcnA 2 (2)
      • SACOL1385
      • aconitate hydratase
      • show on gel show on gel
      • pyruvate dehydrogenase and tca cyle (energy metabolism: tca cycle)
      • co-localization with: AcnA 1 (fermentation)
      • regulation: CcpA, Fur
      • expression plot for AcnA 2
      • GyrB 1 (2)
      • SACOL0005
      • DNA gyrase, B subunit
      • show on gel show on gel
      • dna metabolism (dna metabolism: dna replication, recombination, and repair)
      • expression plot for GyrB 1
      • SACOL1386
      • SACOL1386
      • conserved hypothetical protein TIGR00051
      • show on gel show on gel
      • unknown function or specifity (hypothetical proteins: conserved)
      • expression plot for SACOL1386
      • SACOL0004
      • SACOL0004
      • recF protein
      • show on gel show on gel
      • dna metabolism (dna metabolism: dna replication, recombination, and repair)
      • expression plot for SACOL0004
      • PolA
      • SACOL1737
      • DNA polymerase I
      • show on gel show on gel
      • dna metabolism (dna metabolism: dna replication, recombination, and repair)
      • co-localization with: AlaS (H2O2, diamide, paraquat, NO, fermentation, NO3 resp., heat, mupi.)
      • expression plot for PolA
      • SecA
      • SACOL0816
      • preprotein translocase, SecA subunit
      • show on gel show on gel
      • protein fate (protein fate: protein and peptide secretion and trafficking)
      • expression plot for SecA
      • SufB 1 (2)
      • SACOL0918
      • FeS assembly protein SufB
      • show on gel show on gel
      • biosynthesis of cofactors, prosthetic groups, and carriers (biosynthesis of cofactors, prosthetic groups, and carriers: other)
      • regulation: PerR
      • expression plot for SufB 1
       

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