Proteomic Signature Library for
Staphylococcus aureus COL
  • show
  • profiles
  • threshold (highlighter):
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      summary

      • modus:
      • pattern search
      • expression template:
      • PurK
      • highlighter:
      • 2-fold change
      • sorting:
      • descending similarity to expression template (ascending Euclidean distance)
      • limit:
      • 10
       

      expression plots

      • y-axis:
      • change of expression (binary logarithm) compared to the control at 0 min of the corresponding experiment
      • x-axis:
      • time after stress in minutes (time points of additional unstressed controls are introduced by "c")
      • experiments
      • hydrogen peroxide (abbr.: H2O2, O), diamide (abbr.: D), paraquat (abbr.: P), nitric oxide (abbr.: NO, N), fermentation (abbr.: F), nitrate respiration (abbr.: NO3 resp., A), heat (abbr.: H), puromycin (abbr.: U), mupirocin (abbr.: mupi., M)
      • color code
      • changes higher (lower) than 2x (0.5x) are colored in orange (magenta)
      • significnace:
      • asterisks (*) mark significant changes (details)
      • multiple spots:
      • multiple spots for one and the same protein are extended by a spot number (sum of all individual spots of this protein is given in parentheses)
      • protein overlap:
      • overlapping of different proteins are listed with the abbreviation (letter) of the corresponding experiment where protein overlapping have been observed
      • plot order:
      • descending similarity to expression template (ascending Euclidean distance)
       
      • PurK
      • SACOL1074
      • phosphoribosylaminoimidazole carboxylase, ATPase subunit
      • show on gel show on gel
      • nucleotide metabolism (purines, pyrimidines, nucleosides, and nucleotides: purine ribonucleotide biosynthesis)
      • co-localization with: SACOL1209 (diamide)
      • regulation: PurR
      • expression plot for PurK
      • SACOL0731
      • SACOL0731
      • transcriptional regulator, LysR family
      • show on gel show on gel
      • regulation (regulatory functions: dna interactions)
      • co-localization with: SACOL2196 (H2O2, diamide, paraquat, NO, fermentation, NO3 resp., puromycin)
      • expression plot for SACOL0731
      • PolA
      • SACOL1737
      • DNA polymerase I
      • show on gel show on gel
      • dna metabolism (dna metabolism: dna replication, recombination, and repair)
      • co-localization with: AlaS (H2O2, diamide, paraquat, NO, fermentation, NO3 resp., heat, mupi.)
      • expression plot for PolA
      • Tkt 2 (2)
      • SACOL1377
      • transketolase
      • show on gel show on gel
      • pentose phosphate pathway (energy metabolism: pentose phosphate pathway)
      • co-localization with: Tkt 1 (fermentation)
      • expression plot for Tkt 2
      • SACOL2196
      • SACOL2196
      • conserved hypothetical protein
      • show on gel show on gel
      • unknown function or specifity (hypothetical proteins: conserved)
      • co-localization with: SACOL0731 (H2O2, diamide, paraquat, NO, fermentation, NO3 resp., puromycin)
      • expression plot for SACOL2196
      • Tkt 1 (2)
      • SACOL1377
      • transketolase
      • show on gel show on gel
      • pentose phosphate pathway (energy metabolism: pentose phosphate pathway)
      • co-localization with: Tkt 2 (fermentation)
      • expression plot for Tkt 1
      • KatA 1 (5)
      • SACOL1368
      • catalase
      • show on gel show on gel
      • detoxification (cellular processes: detoxification)
      • co-localization with: SerA 1 (paraquat, NO)
      • regulation: CodY, PerR, SigB+
      • expression plot for KatA 1
      • SACOL2133 1 (2)
      • SACOL2133
      • conserved hypothetical protein
      • show on gel show on gel
      • unknown function or specifity (hypothetical proteins: conserved)
      • expression plot for SACOL2133 1
      • RibF
      • SACOL1291
      • riboflavin biosynthesis protein RibF
      • show on gel show on gel
      • biosynthesis of cofactors, prosthetic groups, and carriers (biosynthesis of cofactors, prosthetic groups, and carriers: riboflavin, fmn, and fad)
      • co-localization with: SACOL1192 (H2O2, diamide, paraquat, fermentation, puromycin, mupi.)
      • expression plot for RibF
      • SACOL1192
      • SACOL1192
      • S-adenosyl-methyltransferase MraW
      • show on gel show on gel
      • unknown function or specifity (unknown function: enzymes of unknown specificity)
      • co-localization with: RibF (H2O2, diamide, paraquat, fermentation, puromycin, mupi.)
      • expression plot for SACOL1192
       

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