Proteomic Signature Library for
Staphylococcus aureus COL
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  • profiles
  • threshold (highlighter):
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      summary

      • modus:
      • pattern search
      • expression template:
      • Pgm 2
      • highlighter:
      • 2-fold change
      • sorting:
      • descending similarity to expression template (ascending Euclidean distance)
      • limit:
      • 10
       

      expression plots

      • y-axis:
      • change of expression (binary logarithm) compared to the control at 0 min of the corresponding experiment
      • x-axis:
      • time after stress in minutes (time points of additional unstressed controls are introduced by "c")
      • experiments
      • hydrogen peroxide (abbr.: H2O2, O), diamide (abbr.: D), paraquat (abbr.: P), nitric oxide (abbr.: NO, N), fermentation (abbr.: F), nitrate respiration (abbr.: NO3 resp., A), heat (abbr.: H), puromycin (abbr.: U), mupirocin (abbr.: mupi., M)
      • color code
      • changes higher (lower) than 2x (0.5x) are colored in orange (magenta)
      • significnace:
      • asterisks (*) mark significant changes (details)
      • multiple spots:
      • multiple spots for one and the same protein are extended by a spot number (sum of all individual spots of this protein is given in parentheses)
      • protein overlap:
      • overlapping of different proteins are listed with the abbreviation (letter) of the corresponding experiment where protein overlapping have been observed
      • plot order:
      • descending similarity to expression template (ascending Euclidean distance)
       
      • Pgm 2 (4)
      • SACOL0841
      • phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent
      • show on gel show on gel
      • glycolysis/gluconeogenesis (energy metabolism: glycolysis/gluconeogenesis)
      • regulation: GapR
      • expression plot for Pgm 2
      • SACOL2161
      • SACOL2161
      • UTP-glucose-1-phosphate uridylyltransferase family protein
      • show on gel show on gel
      • cell envelope (cell envelope: biosynthesis and degradation of surface polysaccharides and lipopolysaccharides)
      • regulation: CcpA, LexA
      • expression plot for SACOL2161
      • RsbW 2 (2)
      • SACOL2055
      • anti-sigma B factor
      • show on gel show on gel
      • regulation (cellular processes: adaptations to atypical conditions)
      • regulation: SigB+
      • expression plot for RsbW 2
      • FabF
      • SACOL0988
      • 3-oxoacyl-(acyl-carrier-protein) synthase II
      • show on gel show on gel
      • fatty acid and phospholipid metabolism (fatty acid and phospholipid metabolism: biosynthesis)
      • co-localization with: PyrC (diamide, paraquat, NO, fermentation, NO3 resp., heat, puromycin, mupi.)
      • regulation: FapR
      • expression plot for FabF
      • SACOL2074
      • SACOL2074
      • D-alanine--D-alanine ligase
      • show on gel show on gel
      • cell envelope (cell envelope: biosynthesis and degradation of murein sacculus and peptidoglycan)
      • expression plot for SACOL2074
      • SACOL1677
      • SACOL1677
      • aminotransferase, class V
      • show on gel show on gel
      • unknown function or specifity (unknown function: enzymes of unknown specificity)
      • expression plot for SACOL1677
      • SACOL2114 2 (2)
      • SACOL2114
      • aldehyde dehydrogenase
      • show on gel show on gel
      • fermentation (energy metabolism: fermentation)
      • regulation: SigB+
      • expression plot for SACOL2114 2
      • PdhD 1 (3)
      • SACOL1105
      • pyruvate dehydrogenase complex E3 component, lipoamide dehydrogenase
      • show on gel show on gel
      • pyruvate dehydrogenase and tca cyle (energy metabolism: pyruvate dehydrogenase)
      • expression plot for PdhD 1
      • SufD 3 (4)
      • SACOL0915
      • FeS assembly protein SufD
      • show on gel show on gel
      • biosynthesis of cofactors, prosthetic groups, and carriers (biosynthesis of cofactors, prosthetic groups, and carriers: other)
      • co-localization with: Hom (H2O2)
      • regulation: PerR
      • expression plot for SufD 3
      • PurC
      • SACOL1075
      • phosphoribosylaminoimidazole-succinocarboxamide synthase
      • show on gel show on gel
      • nucleotide metabolism (purines, pyrimidines, nucleosides, and nucleotides: purine ribonucleotide biosynthesis)
      • regulation: PurR
      • expression plot for PurC
       

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