Proteomic Signature Library for
Staphylococcus aureus COL
  • show
  • profiles
  • threshold (highlighter):
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      summary

      • modus:
      • pattern search
      • expression template:
      • NrdF 1
      • highlighter:
      • 2-fold change
      • sorting:
      • descending similarity to expression template (ascending Euclidean distance)
      • limit:
      • 10
       

      expression plots

      • y-axis:
      • change of expression (binary logarithm) compared to the control at 0 min of the corresponding experiment
      • x-axis:
      • time after stress in minutes (time points of additional unstressed controls are introduced by "c")
      • experiments
      • hydrogen peroxide (abbr.: H2O2, O), diamide (abbr.: D), paraquat (abbr.: P), nitric oxide (abbr.: NO, N), fermentation (abbr.: F), nitrate respiration (abbr.: NO3 resp., A), heat (abbr.: H), puromycin (abbr.: U), mupirocin (abbr.: mupi., M)
      • color code
      • changes higher (lower) than 2x (0.5x) are colored in orange (magenta)
      • significnace:
      • asterisks (*) mark significant changes (details)
      • multiple spots:
      • multiple spots for one and the same protein are extended by a spot number (sum of all individual spots of this protein is given in parentheses)
      • protein overlap:
      • overlapping of different proteins are listed with the abbreviation (letter) of the corresponding experiment where protein overlapping have been observed
      • plot order:
      • descending similarity to expression template (ascending Euclidean distance)
       
      • NrdF 1 (2)
      • SACOL0793
      • ribonucleoside-diphosphate reductase 2, beta subunit
      • show on gel show on gel
      • nucleotide metabolism (purines, pyrimidines, nucleosides, and nucleotides: 2'-deoxyribonucleotide metabolism)
      • regulation: NrdR
      • expression plot for NrdF 1
      • Udk
      • SACOL1666
      • uridine kinase
      • show on gel show on gel
      • nucleotide metabolism (purines, pyrimidines, nucleosides, and nucleotides: salvage of nucleosides and nucleotides)
      • expression plot for Udk
      • SACOL1661
      • SACOL1661
      • acetyl-CoA carboxylase, biotin carboxylase, putative
      • show on gel show on gel
      • fatty acid and phospholipid metabolism (fatty acid and phospholipid metabolism: biosynthesis)
      • regulation: CcpA
      • expression plot for SACOL1661
      • PurD
      • SACOL1083
      • phosphoribosylamine--glycine ligase
      • show on gel show on gel
      • nucleotide metabolism (purines, pyrimidines, nucleosides, and nucleotides: purine ribonucleotide biosynthesis)
      • regulation: PurR
      • expression plot for PurD
      • SACOL1307
      • SACOL1307
      • conserved hypothetical protein TIGR00282
      • show on gel show on gel
      • unknown function or specifity (hypothetical proteins: conserved)
      • expression plot for SACOL1307
      • TrxB 2 (2)
      • SACOL0829
      • thioredoxin-disulfide reductase
      • show on gel show on gel
      • detoxification (energy metabolism: electron transport)
      • co-localization with: MvaD (H2O2, diamide, paraquat, NO, fermentation, NO3 resp., heat, puromycin, mupi.)
      • expression plot for TrxB 2
      • MvaD
      • SACOL0637
      • mevalonate diphosphate decarboxylase
      • show on gel show on gel
      • biosynthesis of cofactors, prosthetic groups, and carriers (biosynthesis of cofactors, prosthetic groups, and carriers: other)
      • co-localization with: TrxB 2 (H2O2, diamide, paraquat, NO, fermentation, NO3 resp., heat, puromycin, mupi.)
      • regulation: SigB+
      • expression plot for MvaD
      • ArgS
      • SACOL0663
      • arginyl-tRNA synthetase
      • show on gel show on gel
      • translation (protein synthesis: trna aminoacylation)
      • expression plot for ArgS
      • TypA
      • SACOL1118
      • GTP-binding protein TypA
      • show on gel show on gel
      • unknown function or specifity (unknown function: general)
      • expression plot for TypA
      • Pta
      • SACOL0634
      • phosphate acetyltransferase
      • show on gel show on gel
      • fermentation (central intermediary metabolism: other)
      • expression plot for Pta
       

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