Proteomic Signature Library for
Staphylococcus aureus COL
  • show
  • profiles
  • threshold (highlighter):
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      summary

      • modus:
      • pattern search
      • expression template:
      • NadE
      • highlighter:
      • 2-fold change
      • sorting:
      • descending similarity to expression template (ascending Euclidean distance)
      • limit:
      • 10
       

      expression plots

      • y-axis:
      • change of expression (binary logarithm) compared to the control at 0 min of the corresponding experiment
      • x-axis:
      • time after stress in minutes (time points of additional unstressed controls are introduced by "c")
      • experiments
      • hydrogen peroxide (abbr.: H2O2, O), diamide (abbr.: D), paraquat (abbr.: P), nitric oxide (abbr.: NO, N), fermentation (abbr.: F), nitrate respiration (abbr.: NO3 resp., A), heat (abbr.: H), puromycin (abbr.: U), mupirocin (abbr.: mupi., M)
      • color code
      • changes higher (lower) than 2x (0.5x) are colored in orange (magenta)
      • significnace:
      • asterisks (*) mark significant changes (details)
      • multiple spots:
      • multiple spots for one and the same protein are extended by a spot number (sum of all individual spots of this protein is given in parentheses)
      • protein overlap:
      • overlapping of different proteins are listed with the abbreviation (letter) of the corresponding experiment where protein overlapping have been observed
      • plot order:
      • descending similarity to expression template (ascending Euclidean distance)
       
      • NadE
      • SACOL1974
      • NH(3)-dependent NAD+ synthetase
      • show on gel show on gel
      • biosynthesis of cofactors, prosthetic groups, and carriers (biosynthesis of cofactors, prosthetic groups, and carriers: pyridine nucleotides)
      • co-localization with: SACOL1402 (H2O2, NO)
      • expression plot for NadE
      • GidA
      • SACOL2737
      • glucose inhibited division protein A
      • show on gel show on gel
      • cell division (unknown function: general)
      • expression plot for GidA
      • SufD 2 (4)
      • SACOL0915
      • FeS assembly protein SufD
      • show on gel show on gel
      • biosynthesis of cofactors, prosthetic groups, and carriers (biosynthesis of cofactors, prosthetic groups, and carriers: other)
      • co-localization with: SerA 2 (H2O2), SufD 1 (H2O2, paraquat, NO, fermentation), KatA 5 (H2O2, paraquat)
      • regulation: PerR
      • expression plot for SufD 2
      • Fhs 2 (2)
      • SACOL1782
      • formate--tetrahydrofolate ligase
      • show on gel show on gel
      • central intermediary metabolism (central intermediary metabolism: one-carbon metabolism)
      • co-localization with: PurH 1 (H2O2)
      • regulation: CcpA
      • expression plot for Fhs 2
      • PurD
      • SACOL1083
      • phosphoribosylamine--glycine ligase
      • show on gel show on gel
      • nucleotide metabolism (purines, pyrimidines, nucleosides, and nucleotides: purine ribonucleotide biosynthesis)
      • regulation: PurR
      • expression plot for PurD
      • TrmU
      • SACOL1676
      • tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
      • show on gel show on gel
      • translation (protein synthesis: trna and rrna base modification)
      • expression plot for TrmU
      • KatA 5 (5)
      • SACOL1368
      • catalase
      • show on gel show on gel
      • detoxification (cellular processes: detoxification)
      • co-localization with: SerA 2 (H2O2), SufD 2 (H2O2, paraquat), SufD 1 (H2O2, paraquat)
      • regulation: CodY, PerR, SigB+
      • expression plot for KatA 5
      • IpdC
      • SACOL0173
      • indole-3-pyruvate decarboxylase
      • show on gel show on gel
      • central intermediary metabolism (central intermediary metabolism: other)
      • co-localization with: LysS 2 (H2O2, diamide, paraquat, NO, NO3 resp., mupi.)
      • regulation: CcpA
      • expression plot for IpdC
      • Tkt 1 (2)
      • SACOL1377
      • transketolase
      • show on gel show on gel
      • pentose phosphate pathway (energy metabolism: pentose phosphate pathway)
      • co-localization with: Tkt 2 (fermentation)
      • expression plot for Tkt 1
      • ThiD1
      • SACOL0626
      • phosphomethylpyrimidine kinase
      • show on gel show on gel
      • biosynthesis of cofactors, prosthetic groups, and carriers (biosynthesis of cofactors, prosthetic groups, and carriers: thiamine)
      • co-localization with: Mtn (diamide, NO3 resp.)
      • expression plot for ThiD1
       

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