Proteomic Signature Library for
Staphylococcus aureus COL
  • show
  • profiles
  • threshold (highlighter):
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      summary

      • modus:
      • pattern search
      • expression template:
      • GlyA 1
      • highlighter:
      • 2-fold change
      • sorting:
      • descending similarity to expression template (ascending Euclidean distance)
      • limit:
      • 10
       

      expression plots

      • y-axis:
      • change of expression (binary logarithm) compared to the control at 0 min of the corresponding experiment
      • x-axis:
      • time after stress in minutes (time points of additional unstressed controls are introduced by "c")
      • experiments
      • hydrogen peroxide (abbr.: H2O2, O), diamide (abbr.: D), paraquat (abbr.: P), nitric oxide (abbr.: NO, N), fermentation (abbr.: F), nitrate respiration (abbr.: NO3 resp., A), heat (abbr.: H), puromycin (abbr.: U), mupirocin (abbr.: mupi., M)
      • color code
      • changes higher (lower) than 2x (0.5x) are colored in orange (magenta)
      • significnace:
      • asterisks (*) mark significant changes (details)
      • multiple spots:
      • multiple spots for one and the same protein are extended by a spot number (sum of all individual spots of this protein is given in parentheses)
      • protein overlap:
      • overlapping of different proteins are listed with the abbreviation (letter) of the corresponding experiment where protein overlapping have been observed
      • plot order:
      • descending similarity to expression template (ascending Euclidean distance)
       
      • GlyA 1 (3)
      • SACOL2105
      • serine hydroxymethyltransferase
      • show on gel show on gel
      • amino acid biosynthesis (amino acid biosynthesis: serine family)
      • expression plot for GlyA 1
      • PurQ
      • SACOL1077
      • phosphoribosylformylglycinamidine synthase I
      • show on gel show on gel
      • nucleotide metabolism (purines, pyrimidines, nucleosides, and nucleotides: purine ribonucleotide biosynthesis)
      • regulation: PurR
      • expression plot for PurQ
      • ThrS 1 (3)
      • SACOL1729
      • threonyl-tRNA synthetase
      • show on gel show on gel
      • translation (protein synthesis: trna aminoacylation)
      • co-localization with: ThrS 2 (H2O2, fermentation, puromycin), NrdE 1 (H2O2, diamide)
      • regulation: T-box(Thr)
      • expression plot for ThrS 1
      • SACOL1985
      • SACOL1985
      • conserved hypothetical protein
      • show on gel show on gel
      • unknown function or specifity (hypothetical proteins: conserved)
      • regulation: SigB-
      • expression plot for SACOL1985
      • ThrS 2 (3)
      • SACOL1729
      • threonyl-tRNA synthetase
      • show on gel show on gel
      • translation (protein synthesis: trna aminoacylation)
      • co-localization with: ThrS 1 (H2O2, fermentation, puromycin), NrdE 1 (H2O2, NO)
      • regulation: T-box(Thr)
      • expression plot for ThrS 2
      • SACOL0427 2 (2)
      • SACOL0427
      • conserved hypothetical protein
      • show on gel show on gel
      • unknown function or specifity (hypothetical proteins: conserved)
      • regulation: CodY, T-box(Met)
      • expression plot for SACOL0427 2
      • AtpG
      • SACOL2096
      • ATP synthase F1, gamma subunit
      • show on gel show on gel
      • electron transport (energy metabolism: atp-proton motive force interconversion)
      • expression plot for AtpG
      • NrdE 1 (2)
      • SACOL0792
      • ribonucleoside-diphosphate reductase, alpha subunit
      • show on gel show on gel
      • nucleotide metabolism (purines, pyrimidines, nucleosides, and nucleotides: 2'-deoxyribonucleotide metabolism)
      • co-localization with: ThrS 2 (H2O2, NO), ThrS 1 (H2O2, diamide), ThrS 3 (paraquat)
      • regulation: NrdR
      • expression plot for NrdE 1
      • SACOL0427 1 (2)
      • SACOL0427
      • conserved hypothetical protein
      • show on gel show on gel
      • unknown function or specifity (hypothetical proteins: conserved)
      • co-localization with: YycF (paraquat)
      • regulation: CodY, T-box(Met)
      • expression plot for SACOL0427 1
      • GluD
      • SACOL0961
      • glutamate dehydrogenase, NAD-specific
      • show on gel show on gel
      • amino acid biosynthesis (amino acid biosynthesis: glutamate family)
      • regulation: CcpA
      • expression plot for GluD
       

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