Proteomic Signature Library for
Staphylococcus aureus COL
  • show
  • profiles
  • threshold (highlighter):
    •  

      summary

      • modus:
      • pattern search
      • expression template:
      • FabZ
      • highlighter:
      • 2-fold change
      • sorting:
      • descending similarity to expression template (ascending Euclidean distance)
      • limit:
      • 10
       

      expression plots

      • y-axis:
      • change of expression (binary logarithm) compared to the control at 0 min of the corresponding experiment
      • x-axis:
      • time after stress in minutes (time points of additional unstressed controls are introduced by "c")
      • experiments
      • hydrogen peroxide (abbr.: H2O2, O), diamide (abbr.: D), paraquat (abbr.: P), nitric oxide (abbr.: NO, N), fermentation (abbr.: F), nitrate respiration (abbr.: NO3 resp., A), heat (abbr.: H), puromycin (abbr.: U), mupirocin (abbr.: mupi., M)
      • color code
      • changes higher (lower) than 2x (0.5x) are colored in orange (magenta)
      • significnace:
      • asterisks (*) mark significant changes (details)
      • multiple spots:
      • multiple spots for one and the same protein are extended by a spot number (sum of all individual spots of this protein is given in parentheses)
      • protein overlap:
      • overlapping of different proteins are listed with the abbreviation (letter) of the corresponding experiment where protein overlapping have been observed
      • plot order:
      • descending similarity to expression template (ascending Euclidean distance)
       
      • FabZ
      • SACOL2091
      • beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ
      • show on gel show on gel
      • fatty acid and phospholipid metabolism (fatty acid and phospholipid metabolism: biosynthesis)
      • regulation: SigB+
      • expression plot for FabZ
      • SACOL1724
      • SACOL1724
      • MutT/nudix family protein
      • show on gel show on gel
      • dna metabolism (dna metabolism: dna replication, recombination, and repair)
      • expression plot for SACOL1724
      • SACOL1561
      • SACOL1561
      • 2-oxoisovalerate dehydrogenase, E1 component, beta subunit
      • show on gel show on gel
      • degradation of aminoacids (energy metabolism: amino acids and amines)
      • expression plot for SACOL1561
      • ClpC
      • SACOL0570
      • ATP-dependent Clp protease, ATP-binding subunit ClpC, authentic frameshift
      • show on gel show on gel
      • protein fate (protein fate: degradation of proteins, peptides, and glycopeptides)
      • co-localization with: MetE (H2O2, diamide, paraquat, NO, fermentation, NO3 resp., heat, puromycin, mupi.)
      • expression plot for ClpC
      • MetE
      • SACOL0428
      • 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
      • show on gel show on gel
      • amino acid biosynthesis (amino acid biosynthesis: aspartate family)
      • co-localization with: ClpC (H2O2, diamide, paraquat, NO, fermentation, NO3 resp., heat, puromycin, mupi.)
      • regulation: CodY, T-box(Met)
      • expression plot for MetE
      • SACOL2667
      • SACOL2667
      • isochorismatase family protein
      • show on gel show on gel
      • unknown function or specifity (unknown function: enzymes of unknown specificity)
      • co-localization with: VraR (NO, fermentation, heat, puromycin)
      • expression plot for SACOL2667
      • CysS
      • SACOL0576
      • cysteinyl-tRNA synthetase
      • show on gel show on gel
      • translation (protein synthesis: trna aminoacylation)
      • regulation: T-box(Cys)
      • expression plot for CysS
      • VraR
      • SACOL1942
      • DNA-binding response regulator VraR
      • show on gel show on gel
      • regulation (cellular processes: toxin production and resistance)
      • co-localization with: SACOL2667 (NO, fermentation, heat, puromycin)
      • expression plot for VraR
      • SACOL0578
      • SACOL0578
      • RNA methyltransferase, TrmH family
      • show on gel show on gel
      • translation (protein synthesis: trna and rrna base modification)
      • expression plot for SACOL0578
      • AroC
      • SACOL1506
      • chorismate synthase
      • show on gel show on gel
      • amino acid biosynthesis (amino acid biosynthesis: aromatic amino acid family)
      • regulation: CodY
      • expression plot for AroC
       

      save & share