Proteomic Signature Library for
Staphylococcus aureus COL
  • show
  • profiles
  • threshold (highlighter):
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      summary

      • modus:
      • pattern search
      • expression template:
      • DnaX
      • highlighter:
      • 2-fold change
      • sorting:
      • descending similarity to expression template (ascending Euclidean distance)
      • limit:
      • 10
       

      expression plots

      • y-axis:
      • change of expression (binary logarithm) compared to the control at 0 min of the corresponding experiment
      • x-axis:
      • time after stress in minutes (time points of additional unstressed controls are introduced by "c")
      • experiments
      • hydrogen peroxide (abbr.: H2O2, O), diamide (abbr.: D), paraquat (abbr.: P), nitric oxide (abbr.: NO, N), fermentation (abbr.: F), nitrate respiration (abbr.: NO3 resp., A), heat (abbr.: H), puromycin (abbr.: U), mupirocin (abbr.: mupi., M)
      • color code
      • changes higher (lower) than 2x (0.5x) are colored in orange (magenta)
      • significnace:
      • asterisks (*) mark significant changes (details)
      • multiple spots:
      • multiple spots for one and the same protein are extended by a spot number (sum of all individual spots of this protein is given in parentheses)
      • protein overlap:
      • overlapping of different proteins are listed with the abbreviation (letter) of the corresponding experiment where protein overlapping have been observed
      • plot order:
      • descending similarity to expression template (ascending Euclidean distance)
       
      • DnaX
      • SACOL0520
      • DNA polymerase III, gamma and tau subunits
      • show on gel show on gel
      • dna metabolism (dna metabolism: dna replication, recombination, and repair)
      • expression plot for DnaX
      • SACOL1296
      • SACOL1296
      • transcriptional regulator, GntR family, putative
      • show on gel show on gel
      • regulation (regulatory functions: dna interactions)
      • expression plot for SACOL1296
      • SACOL0721
      • SACOL0721
      • conserved hypothetical protein
      • show on gel show on gel
      • unknown function or specifity (hypothetical proteins: conserved)
      • expression plot for SACOL0721
      • SACOL0162
      • SACOL0162
      • formate dehydrogenase, NAD-dependent
      • show on gel show on gel
      • fermentation (energy metabolism: anaerobic)
      • expression plot for SACOL0162
      • SACOL1209
      • SACOL1209
      • ribosomal large subunit pseudouridine synthases, RluD subfamily
      • show on gel show on gel
      • translation (protein synthesis: trna and rrna base modification)
      • co-localization with: PurK (diamide)
      • expression plot for SACOL1209
      • SACOL1285
      • SACOL1285
      • N utilization substance protein A, putative
      • show on gel show on gel
      • transcription (transcription: transcription factors)
      • expression plot for SACOL1285
      • SACOL1724
      • SACOL1724
      • MutT/nudix family protein
      • show on gel show on gel
      • dna metabolism (dna metabolism: dna replication, recombination, and repair)
      • expression plot for SACOL1724
      • PtsI 2 (2)
      • SACOL1092
      • phosphoenolpyruvate-protein phosphotransferase
      • show on gel show on gel
      • transport (transport and binding proteins: carbohydrates, organic alcohols, and acids)
      • co-localization with: PtsI 1 (H2O2, NO)
      • expression plot for PtsI 2
      • AtpA 2 (2)
      • SACOL2097
      • ATP synthase F1, alpha subunit
      • show on gel show on gel
      • electron transport (energy metabolism: atp-proton motive force interconversion)
      • expression plot for AtpA 2
      • RsbU
      • SACOL2057
      • sigma factor B regulator protein
      • show on gel show on gel
      • regulation (regulatory functions: protein interactions)
      • co-localization with: ThyA (H2O2), HutG (puromycin)
      • expression plot for RsbU
       

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