Proteomic Signature Library for
Staphylococcus aureus COL
  • show
  • profiles
  • threshold (highlighter):
    •  

      summary

      • modus:
      • pattern search
      • expression template:
      • CysK 1
      • highlighter:
      • 2-fold change
      • sorting:
      • descending similarity to expression template (ascending Euclidean distance)
      • limit:
      • 10
       

      expression plots

      • y-axis:
      • change of expression (binary logarithm) compared to the control at 0 min of the corresponding experiment
      • x-axis:
      • time after stress in minutes (time points of additional unstressed controls are introduced by "c")
      • experiments
      • hydrogen peroxide (abbr.: H2O2, O), diamide (abbr.: D), paraquat (abbr.: P), nitric oxide (abbr.: NO, N), fermentation (abbr.: F), nitrate respiration (abbr.: NO3 resp., A), heat (abbr.: H), puromycin (abbr.: U), mupirocin (abbr.: mupi., M)
      • color code
      • changes higher (lower) than 2x (0.5x) are colored in orange (magenta)
      • significnace:
      • asterisks (*) mark significant changes (details)
      • multiple spots:
      • multiple spots for one and the same protein are extended by a spot number (sum of all individual spots of this protein is given in parentheses)
      • protein overlap:
      • overlapping of different proteins are listed with the abbreviation (letter) of the corresponding experiment where protein overlapping have been observed
      • plot order:
      • descending similarity to expression template (ascending Euclidean distance)
       
      • CysK 1 (3)
      • SACOL0557
      • cysteine synthase
      • show on gel show on gel
      • amino acid biosynthesis (amino acid biosynthesis: serine family)
      • regulation: CymR
      • expression plot for CysK 1
      • SACOL0916 2 (2)
      • SACOL0916
      • cysteine desulfurase, SufS subfamily
      • show on gel show on gel
      • biosynthesis of cofactors, prosthetic groups, and carriers (biosynthesis of cofactors, prosthetic groups, and carriers: other)
      • regulation: PerR
      • expression plot for SACOL0916 2
      • SufD 2 (4)
      • SACOL0915
      • FeS assembly protein SufD
      • show on gel show on gel
      • biosynthesis of cofactors, prosthetic groups, and carriers (biosynthesis of cofactors, prosthetic groups, and carriers: other)
      • co-localization with: SerA 2 (H2O2), SufD 1 (H2O2, paraquat, NO, fermentation), KatA 5 (H2O2, paraquat)
      • regulation: PerR
      • expression plot for SufD 2
      • Cap5P
      • SACOL0151
      • UDP-N-acetylglucosamine 2-epimerase Cap5P
      • show on gel show on gel
      • cell envelope (cell envelope: biosynthesis and degradation of surface polysaccharides and lipopolysaccharides)
      • regulation: CodY, SigB+
      • expression plot for Cap5P
      • Hom
      • SACOL1362
      • homoserine dehydrogenase
      • show on gel show on gel
      • amino acid biosynthesis (amino acid biosynthesis: aspartate family)
      • co-localization with: SufD 3 (H2O2)
      • regulation: CodY
      • expression plot for Hom
      • SACOL0917
      • SACOL0917
      • NifU domain protein
      • show on gel show on gel
      • unknown function or specifity (unknown function: general)
      • co-localization with: RsbW 1 (diamide, paraquat, NO, fermentation, NO3 resp., puromycin, mupi.)
      • regulation: PerR
      • expression plot for SACOL0917
      • CodY 1 (2)
      • SACOL1272
      • transcriptional regulator CodY
      • show on gel show on gel
      • regulation (regulatory functions: dna interactions)
      • expression plot for CodY 1
      • LysS 2 (2)
      • SACOL0562
      • lysyl-tRNA synthetase
      • show on gel show on gel
      • translation (protein synthesis: trna aminoacylation)
      • co-localization with: IpdC (H2O2, diamide, paraquat, NO, NO3 resp., mupi.)
      • expression plot for LysS 2
      • SACOL1460
      • SACOL1460
      • degV family protein
      • show on gel show on gel
      • unknown function or specifity (unknown function: general)
      • co-localization with: Nfo (H2O2)
      • expression plot for SACOL1460
      • SACOL1772 2 (4)
      • SACOL1772
      • aminotransferase, class V
      • show on gel show on gel
      • unknown function or specifity (unknown function: enzymes of unknown specificity)
      • regulation: CodY
      • expression plot for SACOL1772 2
       

      save & share