Proteomic Signature Library for
Staphylococcus aureus COL
  • show
  • profiles
  • threshold (highlighter):
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      summary

      • modus:
      • pattern search
      • expression template:
      • AtpD 2
      • highlighter:
      • 2-fold change
      • sorting:
      • descending similarity to expression template (ascending Euclidean distance)
      • limit:
      • 10
       

      expression plots

      • y-axis:
      • change of expression (binary logarithm) compared to the control at 0 min of the corresponding experiment
      • x-axis:
      • time after stress in minutes (time points of additional unstressed controls are introduced by "c")
      • experiments
      • hydrogen peroxide (abbr.: H2O2, O), diamide (abbr.: D), paraquat (abbr.: P), nitric oxide (abbr.: NO, N), fermentation (abbr.: F), nitrate respiration (abbr.: NO3 resp., A), heat (abbr.: H), puromycin (abbr.: U), mupirocin (abbr.: mupi., M)
      • color code
      • changes higher (lower) than 2x (0.5x) are colored in orange (magenta)
      • significnace:
      • asterisks (*) mark significant changes (details)
      • multiple spots:
      • multiple spots for one and the same protein are extended by a spot number (sum of all individual spots of this protein is given in parentheses)
      • protein overlap:
      • overlapping of different proteins are listed with the abbreviation (letter) of the corresponding experiment where protein overlapping have been observed
      • plot order:
      • descending similarity to expression template (ascending Euclidean distance)
       
      • AtpD 2 (2)
      • SACOL2095
      • ATP synthase F1, beta subunit
      • show on gel show on gel
      • electron transport (energy metabolism: atp-proton motive force interconversion)
      • expression plot for AtpD 2
      • GuaA 1 (2)
      • SACOL0461
      • GMP synthase
      • show on gel show on gel
      • nucleotide metabolism (purines, pyrimidines, nucleosides, and nucleotides: purine ribonucleotide biosynthesis)
      • regulation: Purine
      • expression plot for GuaA 1
      • TyrS
      • SACOL1778
      • tyrosyl-tRNA synthetase
      • show on gel show on gel
      • translation (protein synthesis: trna aminoacylation)
      • regulation: T-box(Tyr)
      • expression plot for TyrS
      • Tuf 6 (8)
      • SACOL0594
      • translation elongation factor Tu
      • show on gel show on gel
      • translation (protein synthesis: translation factors)
      • co-localization with: Tuf 5 (NO)
      • expression plot for Tuf 6
      • Pyk 3 (3)
      • SACOL1745
      • pyruvate kinase
      • show on gel show on gel
      • glycolysis/gluconeogenesis (energy metabolism: glycolysis/gluconeogenesis)
      • co-localization with: Pyk 2 (H2O2, paraquat)
      • regulation: CcpA
      • expression plot for Pyk 3
      • PpaC
      • SACOL1982
      • manganese-dependent inorganic pyrophosphatase
      • show on gel show on gel
      • central intermediary metabolism (central intermediary metabolism: phosphorus compounds)
      • expression plot for PpaC
      • GuaB 2 (2)
      • SACOL0460
      • inosine-5-monophosphate dehydrogenase
      • show on gel show on gel
      • nucleotide metabolism (purines, pyrimidines, nucleosides, and nucleotides: purine ribonucleotide biosynthesis)
      • regulation: Purine
      • expression plot for GuaB 2
      • LeuD
      • SACOL2049
      • 3-isopropylmalate dehydratase, small subunit
      • show on gel show on gel
      • amino acid biosynthesis (amino acid biosynthesis: pyruvate family)
      • regulation: CodY
      • expression plot for LeuD
      • Nfo
      • SACOL1614
      • endonuclease IV
      • show on gel show on gel
      • dna metabolism (dna metabolism: dna replication, recombination, and repair)
      • co-localization with: SACOL1460 (H2O2)
      • expression plot for Nfo
      • Cbf1
      • SACOL1898
      • cmp-binding-factor 1
      • show on gel show on gel
      • regulation (mobile and extrachromosomal element functions: plasmid functions)
      • expression plot for Cbf1
       

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